Publications

Zhihui Du, Oliver Alvarado Rodriguez, Fuhuan Li, Mohammad Dindoost, David Bader (2023). Contour Algorithm for Connectivity. HiPC 2023.

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David Bader (2023). Fast Triangle Counting (Graph Challenge Innovation Award). IEEE HPEC 2023.

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David Bader, Fuhuan Li, Anya Ganeshan, Ahmet Gundogdu, Jason Lew, Oliver Alvarado Rodriguez, Zhihui Du (2023). Triangle Counting Through Cover-Edges (Graph Challenge Student Innovation Award). IEEE HPEC 2023.

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Oliver Alvarado Rodriguez, Fernando Vera Buschmann, Zhihui Du, David Bader (2023). Property Graphs in Arachne. IEEE HPEC 2023.

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Soroush Vahidi, Baruch Schieber, Zhihui Du, David Bader (2023). Parallel Longest Common SubSequence Analysis In Chapel. IEEE HPEC 2023.

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Luca Cappelletti, Tommaso Fontana, Oded Green, David Bader (2023). Parallel Triangles and Squares Count for Multigraphs Using Vertex Covers. ICCS 2023.

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Zhihui Du, Oliver Alvarado Rodriguez, Fuhuan Li, Mohammad Dindoost, David Bader (2023). Minimum-Mapping based Connected Components Algorithm. CHIUW.

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Luca Cappelletti, Tommaso Fontana, Justin Reese, David Bader (2023). Billion-scale Detection of Isomorphic Nodes. IEEE GrAPL.

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Zhihui Du, Joseph Patchett, Oliver Alvarado Rodriguez, Fuhuan Li, David Bader (2022). High-Performance Truss Analysis in Arkouda. HiPC 2022.

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Zhihui Du, Sen Zhang, David Bader (2022). Parallel Suffix Sorting for Large String Analytics. PPAM 2022.

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Joseph Patchett, Zhihui Du, Fuhuan Li, David Bader (2022). Triangle Centrality in Arkouda. IEEE HPEC.

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Oliver Alvarado Rodriguez, Zhihui Du, Joseph Patchett, Fuhuan Li, David Bader (2022). Arachne: An Arkouda Package for Large-Scale Graph Analytics. IEEE HPEC.

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Zhihui Du, Joseph Patchett, Oliver Alvarado Rodriguez, David Bader (2022). Truss Analytics Algorithms and Integration in Arkouda. CHIUW.

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Oded Green, Zhihui Du, Sanyamee Patel, Zehui Xie, Hang Liu, David Bader (2021). Anti-Section Transitive Closure. HiPC 2021.

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Zhihui Du, Oliver Alvarado Rodriguez, David Bader (2021). Large Scale String Analytics In Arkouda. IEEE HPEC.

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Zhihui Du, Oliver Alvarado Rodriguez, David Bader (2021). Enabling Exploratory Large Scale Graph Analytics through Arkouda. IEEE HPEC.

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Fuhuan Li, David Bader (2021). A GraphBLAS implementation of Triangle Centrality. IEEE HPEC.

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Joseph Patchett, Zhihui Du, David Bader (2021). K-Truss Implementation in Arkouda (Extended Abstract). IEEE HPEC.

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Zhihui Du, Oliver Alvarado Rodriguez, David A. Bader, Michael Merrill, William Reus (2021). Exploratory Large Scale Graph Analytics in Arkouda. CHIUW.

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Gábor Szárnyas, David A. Bader, Timothy A. Davis, James Kitchen, Timothy G. Mattson, Scott McMillan, Erik Welch (2021). LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms. GrAPL.

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Zhihui Du, Sen Zhang, David Bader, Jingkun Hu (2020). An Efficient LP Rounding Scheme for Replica Placement. HPEC.

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Austin Chase Minor, Zhihui Du, Yankui Sun, David Bader, Chao Wu, Jianyan Wei (2020). GPU Accelerated Anomaly Detection of Large Scale Light Curves. HPEC.

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Todd Hricik, David Bader, Oded Green (2020). Using RAPIDS AI to Accelerate Graph Data Science Workflows. HPEC.

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Bartley Richardson, Bradley Rees, Tom Drabas, Even Oldridge, David Bader, Rachel Allen (2020). Accelerating and Expanding End-to-End Data Science Workflows with DL/ML Interoperability Using RAPIDS. KDD.

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Oded Green, James Fox, Jeff Young, David Bader (2019). Performance Impact of Memory Channels on Sparse and Irregular Algorithms. 9th IEEE/ACM Workshop on Irregular Applications: Architectures and Algorithms, IA3@SC 2019, Denver, CO, USA, November 18, 2019.

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Kasimir Gabert, James Fox, Oded Green, Xiaojing An, David A. Bader (2019). Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems. The 23rd Annual IEEE High Performance Extreme Computing Conference (HPEC), Waltham, MA, September 24-26, 2019.

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Alexander van der Grinten, Elisabetta Bergamini, Oded Green, David A. Bader, Henning Meyerhenke (2018). Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. 26th Annual European Symposium on Algorithms, ESA 2018, August 20-22, 2018, Helsinki, Finland.

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Eisha Nathan, James Fairbanks, David Bader (2018). Ranking in Dynamic Graphs Using Exponential Centrality. Complex Networks & Their Applications VI.

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David A. Bader (2018). Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications. Proceedings of the 30th on Symposium on Parallelism in Algorithms and Architectures, SPAA 2018, Vienna, Austria, July 16-18, 2018.

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Oded Green, James Fox, Alex Watkins, Alok Tripathy, Kasimir Gabert, Euna Kim, Xiaojing An, Kumar Aatish, David A. Bader (2018). Logarithmic Radix Binning and Vectorized Triangle Counting. The 22nd Annual IEEE High Performance Extreme Computing Conference, HPEC 2018, Waltham, MA, USA, September 25-27, 2018.

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Srinivas Aluru, David A. Bader, Paul Medvedev (2018). Introduction to HiCOMB 2018. 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2018, Vancouver, BC, Canada, May 21-25, 2018.

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Federico Busato, Oded Green, Nicola Bombieri, David A. Bader (2018). Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs. The 22nd Annual IEEE High Performance Extreme Computing Conference, HPEC 2018, Waltham, MA, USA, September 25-27, 2018.

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James Fox, Oded Green, Kasimir Gabert, Xiaojing An, David A. Bader (2018). Fast and Adaptive List Intersections on the GPU. 2018 IEEE High Performance Extreme Computing Conference, HPEC 2018, Waltham, MA, USA, September 25-27, 2018.

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Chunxing Yin, Jason Riedy, David A. Bader (2018). A New Algorithmic Model for Graph Analysis of Streaming Data. Proceedings of the 14th International Workshop on Mining and Learning with Graphs (MLG), held in conjunction with 24th ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD).

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Xinning Hui, Zhihui Du, Jason Liu, Hongyang Sun, Yuxiong He, David A. Bader (2017). When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers. 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2017, Orlando / Buena Vista, FL, USA, May 29 - June 2, 2017.

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Anita Zakrzewska, David A. Bader (2017). Streaming Graph Sampling with Size Restrictions. Proceedings of the 2017 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining 2017, Sydney, Australia, July 31 - August 03, 2017.

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Oded Green, James Fox, Euna Kim, Federico Busato, Nicola Bombieri, Kartik Lakhotia, Shijie Zhou, Shreyas G. Singapura, Hanqing Zeng, Rajgopal Kannan, Viktor K. Prasanna, David A. Bader (2017). Quickly finding a truss in a haystack. The 21st Annual IEEE High Performance Extreme Computing Conference, HPEC 2017, Waltham, MA, USA, September 12-14, 2017.

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David A. Bader (2017). Introduction to EMBRACE Workshop. 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2017, Orlando / Buena Vista, FL, USA, May 29 - June 2, 2017.

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Devavret Makkar, David A. Bader, Oded Green (2017). Exact and Parallel Triangle Counting in Dynamic Graphs. 24th IEEE International Conference on High Performance Computing, HiPC 2017, Jaipur, India, December 18-21, 2017.

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Shijie Zhou, Kartik Lakhotia, Shreyas G. Singapura, Hanqing Zeng, Rajgopal Kannan, Viktor K. Prasanna, James Fox, Euna Kim, Oded Green, David A. Bader (2017). Design and implementation of parallel PageRank on multicore platforms. The 21st Annual IEEE High Performance Extreme Computing Conference, HPEC 2017, Waltham, MA, USA, September 12-14, 2017.

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Eisha Nathan, David A. Bader (2017). Approximating Personalized Katz Centrality in Dynamic Graphs. Parallel Processing and Applied Mathematics - 12th International Conference, PPAM 2017, Lublin, Poland, September 10-13, 2017, Revised Selected Papers, Part I.

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Eisha Nathan, David A. Bader (2017). A Dynamic Algorithm for Updating Katz Centrality in Graphs. Proceedings of the 2017 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining 2017, Sydney, Australia, July 31 - August 03, 2017.

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David Bader, Aleksandra Michalewicz, Oded Green, Jessie Birkett-Rees, Jason Riedy, James Fairbanks, Anita Zakrzewska (2016). Semantic database applications at the Samtavro Cemetery, Georgia. The 44th Computer Applications and Quantitative Methods in Archaeology Conference (CAA), Oslo, Norway, March 29 – April 2, 2016.

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James P. Fairbanks, Anita Zakrzewska, David A. Bader (2016). New stopping criteria for spectral partitioning. 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2016, San Francisco, CA, USA, August 18-21, 2016.

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Jeremy Kepner, Peter Aaltonen, David A. Bader, Aydin Buluç, Franz Franchetti, John R. Gilbert, Dylan Hutchison, Manoj Kumar, Andrew Lumsdaine, Henning Meyerhenke, Scott McMillan, Carl Yang, John D. Owens, Marcin Zalewski, Timothy G. Mattson, José E. Moreira (2016). Mathematical foundations of the GraphBLAS. The 20th Annual IEEE High Performance Extreme Computing Conference, HPEC 2016, Waltham, MA, USA, September 13-15, 2016.

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Srinivas Aluru, David A. Bader, Ananth Kalyanaraman, Jaroslaw Zola (2016). HiCOMB Introduction and Committees. 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2016, Chicago, IL, USA, May 23-27, 2016.

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David A. Bader (2016). GABB 2016 Keynote. 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2016, Chicago, IL, USA, May 23-27, 2016.

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Oded Green, David A. Bader (2016). cuSTINGER: Supporting dynamic graph algorithms for GPUs. 2016 IEEE High Performance Extreme Computing Conference, HPEC 2016, Waltham, MA, USA, September 13-15, 2016.

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Anita Zakrzewska, David A. Bader (2016). Aging data in dynamic graphs: A comparative study. 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2016, San Francisco, CA, USA, August 18-21, 2016.

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Vipin Sachdeva, Srinivas Aluru, David A. Bader (2016). A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. 2016 IEEE International Parallel and Distributed Processing Symposium Workshops, IPDPS Workshops 2016, Chicago, IL, USA, May 23-27, 2016.

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Anita Zakrzewska, Eisha Nathan, James P. Fairbanks, David A. Bader (2016). A local measure of community change in dynamic graphs. 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2016, San Francisco, CA, USA, August 18-21, 2016.

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David A. Bader, Yihua Huang, Ananth Kalyanaraman (2015). ParLearning Keynotes. 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, IPDPS 2015, Hyderabad, India, May 25-29, 2015.

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Adam McLaughlin, Duane Merrill, Michael Garland, David A. Bader (2015). Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures. 2015 International Conference on Parallel Architectures and Compilation, PACT 2015, San Francisco, CA, USA, October 18-21, 2015.

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Sanguthevar Rajasekaran, Srinivas Aluru, David A. Bader (2015). HiCOMB Introduction and Committees. 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, IPDPS 2015, Hyderabad, India, May 25-29, 2015.

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Anita Zakrzewska, David A. Bader (2015). Fast Incremental Community Detection on Dynamic Graphs. Parallel Processing and Applied Mathematics - 11th International Conference, PPAM 2015, Krakow, Poland, September 6-9, 2015. Revised Selected Papers, Part I.

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Adam McLaughlin, David A. Bader (2015). Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs. 21st IEEE International Conference on Parallel and Distributed Systems, ICPADS 2015, Melbourne, Australia, December 14-17, 2015.

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Daniel Dauwe, Eric Jonardi, Ryan Friese, Sudeep Pasricha, Anthony A. Maciejewski, David A. Bader, Howard Jay Siegel (2015). A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing. 2015 IEEE International Parallel and Distributed Processing Symposium Workshop, IPDPS 2015, Hyderabad, India, May 25-29, 2015.

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Adam McLaughlin, E. Jason Riedy, David A. Bader (2015). A fast, energy-efficient abstraction for simultaneous breadth-first searches. The 19th Annual IEEE High Performance Extreme Computing Conference, HPEC 2015, Waltham, MA, USA, September 15-17, 2015.

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Anita Zakrzewska, David A. Bader (2015). A Dynamic Algorithm for Local Community Detection in Graphs. Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2015, Paris, France, August 25 - 28, 2015.

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Adam McLaughlin, David A. Bader (2014). Scalable and High Performance Betweenness Centrality on the GPU (Best Student Paper Finalist). International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2014, New Orleans, LA, USA, November 16-21, 2014.

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Adam McLaughlin, David A. Bader (2014). Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics. 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, Phoenix, AZ, USA, May 19-23, 2014.

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Adam McLaughlin, E. Jason Riedy, David A. Bader (2014). Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs. IEEE High Performance Extreme Computing Conference, HPEC 2014, Waltham, MA, USA, September 9-11, 2014.

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Oded Green, Lluís-Miquel Munguía, David A. Bader (2014). Load balanced clustering coefficients. Proceedings of the first workshop on Parallel programming for analytics applications, PPAA 2014, Orlando, Florida, USA, February 16, 2014.

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Alba Cristina Magalhaes, Alves de Melo, Srinivas Aluru, David A. Bader (2014). HiCOMB Introduction and Committees. 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, Phoenix, AZ, USA, May 19-23, 2014.

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Tim Mattson, David A. Bader, Aydin Buluç, John R. Gilbert, Joseph Gonzalez, Jeremy Kepner (2014). GABB Introduction. 2014 IEEE International Parallel & Distributed Processing Symposium Workshops, Phoenix, AZ, USA, May 19-23, 2014.

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Yang You, David A. Bader, Maryam Mehri Dehnavi (2014). Designing a Heuristic Cross-Architecture Combination for Breadth-First Search. 43rd International Conference on Parallel Processing, ICPP 2014, Minneapolis, MN, USA, September 9-12, 2014.

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Robert Campbell McColl, David Ediger, Jason Poovey, Dan Campbell, David A. Bader (2014). A performance evaluation of open source graph databases. Proceedings of the first workshop on Parallel programming for analytics applications, PPAA 2014, Orlando, Florida, USA, February 16, 2014.

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Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader (2014). A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. Computing and Combinatorics - 20th International Conference, COCOON 2014, Atlanta, GA, USA, August 4-6, 2014. Proceedings.

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Tim Mattson, David A. Bader, Jonathan W. Berry, Aydin Buluç, Jack J. Dongarra, Christos Faloutsos, John Feo, John R. Gilbert, Joseph Gonzalez, Bruce Hendrickson, Jeremy Kepner, Charles E. Leiserson, Andrew Lumsdaine, David A. Padua, Stephen Poole, Steven P. Reinhardt, Mike Stonebraker, Steve Wallach, Andrew Yoo (2013). Standards for graph algorithm primitives. IEEE High Performance Extreme Computing Conference, HPEC 2013, Waltham, MA, USA, September 10-12, 2013.

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E. Jason Riedy, David A. Bader (2013). Multithreaded Community Monitoring for Massive Streaming Graph Data. 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, Cambridge, MA, USA, May 20-24, 2013.

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Anita Zakrzewska, David A. Bader (2013). Measuring the Sensitivity of Graph Metrics to Missing Data. Parallel Processing and Applied Mathematics - 10th International Conference, PPAM 2013, Warsaw, Poland, September 8-11, 2013, Revised Selected Papers, Part I.

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David Ediger, David A. Bader (2013). Investigating Graph Algorithms in the BSP Model on the Cray XMT. 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, Cambridge, MA, USA, May 20-24, 2013.

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Jaroslaw Zola, David A. Bader, Srinivas Aluru (2013). HiCOMB Introduction. 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, Cambridge, MA, USA, May 20-24, 2013.

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Oded Green, David A. Bader (2013). Faster Clustering Coefficient Using Vertex Covers. International Conference on Social Computing, SocialCom, Washington, DC, USA, 8-14 September, 2013.

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Zhihui Du, Hongyang Sun, Yuxiong He, Yu He, David A. Bader, Huazhe Zhang (2013). Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality. 27th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2013, Cambridge, MA, USA, May 20-24, 2013.

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Ted E. Senator, Henry G. Goldberg, Alex Memory, William T. Young, Brad Rees, Robert Pierce, Daniel Huang, Matthew Reardon, David A. Bader, Edmond Chow, Irfan A. Essa, Joshua Jones, Vinay Bettadapura, Duen Horng Chau, Oded Green, Oguz Kaya, Anita Zakrzewska, Erica Briscoe, Rudolph L. Mappus IV, Robert McColl, Lora Weiss, Thomas G. Dietterich, Alan Fern, Weng-Keen Wong, Shubhomoy Das, Andrew Emmott, Jed Irvine, Jay Yoon Lee, Danai Koutra, Christos Faloutsos, Daniel D. Corkill, Lisa Friedland, Amanda Gentzel, David D. Jensen (2013). Detecting insider threats in a real corporate database of computer usage activity. The 19th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD 2013, Chicago, IL, USA, August 11-14, 2013.

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David Ediger, David A. Bader (2013). Designing Hybrid Architectures for Massive-Scale Graph Analysis. 2013 IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum, Cambridge, MA, USA, May 20-24, 2013.

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James P. Fairbanks, David Ediger, Robert McColl, David A. Bader, Eric Gilbert (2013). A statistical framework for streaming graph analysis. Advances in Social Networks Analysis and Mining 2013, ASONAM ‘13, Niagara, ON, Canada - August 25 - 29, 2013.

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Robert McColl, Oded Green, David A. Bader (2013). A new parallel algorithm for connected components in dynamic graphs. 20th Annual International Conference on High Performance Computing, HiPC 2013, Bengaluru (Bangalore), Karnataka, India, December 18-21, 2013.

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Lluís-Miquel Munguía, David A. Bader, Eduard Ayguadé (2012). Task-based parallel breadth-first search in heterogeneous environments. 19th International Conference on High Performance Computing, HiPC 2012, Pune, India, December 18-22, 2012.

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David Ediger, Robert McColl, E. Jason Riedy, David A. Bader (2012). STINGER: High performance data structure for streaming graphs (Best Paper Award). IEEE Conference on High Performance Extreme Computing, HPEC 2012, Waltham, MA, USA, September 10-12, 2012.

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E. Jason Riedy, David A. Bader, Henning Meyerhenke (2012). Scalable Multi-threaded Community Detection in Social Networks. 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, IPDPS 2012, Shanghai, China, May 21-25, 2012.

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Mark J. Clement, Quinn Snell, Srinivas Aluru, David A. Bader (2012). HiCOMB Introduction. 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, IPDPS 2012, Shanghai, China, May 21-25, 2012.

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David A. Bader (2012). HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing. 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, IPDPS 2012, Shanghai, China, May 21-25, 2012.

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Oded Green, Robert McColl, David A. Bader (2012). GPU Merge Path: A GPU Merging Algorithm. Proceedings of the 26th ACM International Conference on Supercomputing.

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Jussara Marandola, Stéphane Louise, Loïc Cudennec, Jean-Thomas Acquaviva, David A. Bader (2012). Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems. 2012 International Symposium on System on Chip, ISSoC 2012, Tampere, Finland, October 10-12, 2012.

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E. Jason Riedy, Henning Meyerhenke, David A. Bader, David Ediger, Timothy G. Mattson (2012). Analysis of streaming social networks and graphs on multicore architectures. 2012 IEEE International Conference on Acoustics, Speech and Signal Processing, ICASSP 2012, Kyoto, Japan, March 25-30, 2012.

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Oded Green, Robert McColl, David A. Bader (2012). A Fast Algorithm for Streaming Betweenness Centrality. 2012 International Conference on Privacy, Security, Risk and Trust, PASSAT 2012, and 2012 International Confernece on Social Computing, SocialCom 2012, Amsterdam, Netherlands, September 3-5, 2012.

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David Ediger, E. Jason Riedy, David A. Bader, Henning Meyerhenke (2011). Tracking Structure of Streaming Social Networks. 25th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2011, Anchorage, Alaska, USA, 16-20 May 2011 - Workshop Proceedings.

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D. Mizell, D. A. Bader, E. L. Goodman, D. J. Haglin (2011). Semantic Databases and Supercomputers. 2011 Semantic Technology Conference (SemTech), San Francisco, CA, June 5-9, 2011.

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E. Jason Riedy, Henning Meyerhenke, David Ediger, David A. Bader (2011). Parallel Community Detection for Massive Graphs. Parallel Processing and Applied Mathematics - 9th International Conference, PPAM 2011, Torun, Poland, September 11-14, 2011. Revised Selected Papers, Part I.

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Ananth Kalyanaraman, Srinivas Aluru, David A. Bader (2011). HiCOMB Introduction. 25th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2011, Anchorage, Alaska, USA, 16-20 May 2011 - Workshop Proceedings.

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Wenjie Liu, Zhihui Du, Yu Xiao, David A. Bader, Chen Xu (2011). A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters. 25th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2011, Anchorage, Alaska, USA, 16-20 May 2011 - Workshop Proceedings.

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David A. Bader, Joe McCloskey (2010). Modularity and Graph Algorithms. SIAM AN10 Minisymposium on Analyzing Massive Real-World Graphs.

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Virat Agarwal, Fabrizio Petrini, Davide Pasetto, David A. Bader (2010). Scalable Graph Exploration on Multicore Processors. Conference on High Performance Computing Networking, Storage and Analysis, SC 2010, New Orleans, LA, USA, November 13-19, 2010.

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Zhuhui Du, Zhaoming Yin, Wenjie Liu, David Bader (2010). On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment. 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

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David A. Bader (2010). Message from general chair. 24th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2010, Atlanta, Georgia, USA, 19-23 April 2010 - Conference Proceedings.

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David Ediger, Karl Jiang, E. Jason Riedy, David A. Bader (2010). Massive streaming data analytics: A case study with clustering coefficients. 24th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2010, Atlanta, Georgia, USA, 19-23 April 2010 - Workshop Proceedings.

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David Ediger, Karl Jiang, E. Jason Riedy, David A. Bader, Courtney Corley, Robert M. Farber, William N. Reynolds (2010). Massive Social Network Analysis: Mining Twitter for Social Good. 39th International Conference on Parallel Processing, ICPP 2010, San Diego, California, USA, 13-16 September 2010.

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Seunghwa Kang, David A. Bader (2010). Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system. 24th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2010, Atlanta, Georgia, USA, 19-23 April 2010 - Workshop Proceedings.

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George Karypis, Srinivas Aluru, David A. Bader (2010). HiCOMB 2010: Message from the workshop chairs. 24th IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2010, Atlanta, Georgia, USA, 19-23 April 2010 - Workshop Proceedings.

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Yin Ye, Zhihui Du, David Bader (2010). GPUMemSort: A High Performance Graphic Co-processors Sorting Algorithm for Large Scale In-Memory Data. Annual International Conference on Advances in Distributed and Parallel Computing (ADPC 2010), Singapore, November 1-2, 2010.

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Vipin Sachdeva, Michael Kistler, David A. Bader (2010). Evaluating Cell/B.E software cache for ClustalW. International Symposium on Circuits and Systems (ISCAS 2010), May 30 - June 2, 2010, Paris, France.

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David Bader (2010). Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures. Facing the Multicore-Challenge: Aspects of New Paradigms and Technologies in Parallel Computing, Lecture Notes in Computer Science.

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Seunghwa Kang, David A. Bader, Richard W. Vuduc (2009). Understanding the design trade-offs among current multicore systems for numerical computations. 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009.

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Rick Quax, David A. Bader, Peter M. A. Sloot (2009). Simulating Individual-Based Models of Epidemics in Hierarchical Networks. Computational Science - ICCS 2009, 9th International Conference, Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part I.

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Amrita Mathuriya, David A. Bader, Christine E. Heitsch, Stephen C. Harvey (2009). GTfold: a scalable multicore code for RNA secondary structure prediction. Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), Honolulu, Hawaii, USA, March 9-12, 2009.

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Karl Jiang, David Ediger, David A. Bader (2009). Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation. ICPP 2009, International Conference on Parallel Processing, Vienna, Austria, 22-25 September 2009.

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Virat Agarwal, David A. Bader, Lin Dan, Lurng-Kuo Liu, Davide Pasetto, Michael Perrone, Fabrizio Petrini (2009). Faster FAST: Multicore Acceleration of Streaming Financial Data (Best Paper Award). 24th International Supercomputing Conference (ISC), Hamburg, Germany, June 23-26, 2009.

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Kamesh Madduri, David A. Bader (2009). Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis. 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009.

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Seunghwa Kang, David A. Bader (2009). An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs. Proceedings of the 14th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP 2009, Raleigh, NC, USA, February 14-18, 2009.

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Song Hao, Zhihui Du, David A. Bader, Yin Ye (2009). A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache. ICPP 2009, International Conference on Parallel Processing, Vienna, Austria, 22-25 September 2009.

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Kamesh Madduri, David Ediger, Karl Jiang, David A. Bader, Daniel G. Chavarría-Miranda (2009). A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets. 23rd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2009, Rome, Italy, May 23-29, 2009.

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David A. Bader, Kamesh Madduri (2008). SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks. 22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008.

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David A. Bader (2008). Petascale Computing for Large-Scale Graph Problems. International Conference on Parallel Processing and Applied Mathematics.

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Seunghwa Kang, David A. Bader (2008). Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine. 2008 International Conference on Parallel Processing, ICPP 2008, September 8-12, 2008, Portland, Oregon, USA.

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David A. Bader, Aparna Chandramowlishwaran, Virat Agarwal (2008). On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis. 2008 International Conference on Parallel Processing, ICPP 2008, September 8-12, 2008, Portland, Oregon, USA.

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David A. Bader, Sulabh Patel (2008). High performance MPEG-2 software decoder on the Cell Broadband Engine. 22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008.

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Virat Agarwal, Lurng-Kuo Liu, David A. Bader (2008). Financial modeling on the Cell Broadband Engine. 22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008.

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David A. Bader, Viktor K. Prasanna (2008). DOSA: design optimizer for scientific applications. 22nd IEEE International Symposium on Parallel and Distributed Processing, IPDPS 2008, Miami, Florida USA, April 14-18, 2008.

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Song Hao, Zhihui Du, David A. Bader, Man Wang (2008). A Prediction Based CMP Cache Migration Policy. 10th IEEE International Conference on High Performance Computing and Communications, HPCC 2008, 25-27 Sept. 2008, Dalian, China.

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C. A. Stewart, M. Lingwall, D. Bader (2007). Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology. 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering.

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Guojing Cong, David A. Bader (2007). Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors. Parallel and Distributed Processing and Applications, 5th International Symposium, ISPA 2007, Niagara Falls, Canada, August 29-31, 2007, Proceedings.

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Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman (2007). Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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David A. Bader, Varun Kanade, Kamesh Madduri (2007). SWARM: A Parallel Programming Framework for Multicore Processors. 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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David A. Bader (2007). Petascale Computing for Large-Scale Graph Problems (Abstract). 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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David A. Bader (2007). Petascale Computing for Large-Scale Graph Problems. Parallel Processing and Applied Mathematics, 7th International Conference, PPAM 2007, Gdansk, Poland, September 9-12, 2007, Revised Selected Papers.

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David A. Bader, Virat Agarwal, Kamesh Madduri (2007). On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking. 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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David A. Bader, K. Madduri (2007). High-Performance Combinatorial Techniques for Analyzing Massive Dynamic Interaction Networks. DIMACS Workshop on Computational Methods for Dynamic Interaction Networks, DIMACS Center, Rutgers University, Piscataway, NJ, September 24-25, 2007.

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David A. Bader, Virat Agarwal (2007). FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine. High Performance Computing - HiPC 2007, 14th International Conference, Goa, India, December 18-21, 2007, Proceedings.

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David A. Bader, Viktor K. Prasanna (2007). DOSA: Design Optimizer for Scientific Applications. 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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David A. Bader, Shiva Kintali, Kamesh Madduri, Milena Mihail (2007). Approximating Betweenness Centrality. Algorithms and Models for the Web-Graph, 5th International Workshop, WAW 2007, San Diego, CA, USA, December 11-12, 2007, Proceedings.

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Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak (2007). An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. Proceedings of the Nine Workshop on Algorithm Engineering and Experiments, ALENEX 2007, New Orleans, Louisiana, USA, January 6, 2007.

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Joseph R. Crobak, Jonathan W. Berry, Kamesh Madduri, David A. Bader (2007). Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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David A. Bader, Kamesh Madduri (2007). A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms. 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), Proceedings, 26-30 March 2007, Long Beach, California, USA.

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Matthew J. Sottile, Vaddadi P. Chandu, David A. Bader (2006). Performance analysis of parallel programs via message-passing graph traversal. 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece.

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Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak (2006). Parallel Shortest Path Algorithms for Solving Large-Scale Instances. The Shortest Path Problem: Ninth DIMACS Implementation Challenge.

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David A. Bader, Kamesh Madduri (2006). Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks. 2006 International Conference on Parallel Processing (ICPP 2006), 14-18 August 2006, Columbus, Ohio, USA.

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Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman (2006). High-performance computing methods for computational genomics. Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, November 11-17, 2006, Tampa, FL, USA.

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David A. Bader, Vaddadi P. Chandu, Mi Yan (2006). ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony. 2006 International Conference on Parallel Processing (ICPP 2006), 14-18 August 2006, Columbus, Ohio, USA.

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David A. Bader, V. Agarwal, K. Madduri (2006). Efficient Implementation of Irregular Algorithms on Cell Multi-core Architecture. Poster Session. Supercomputing ’06 Workshop: General- Purpose GPU Computing: Practice And Experience, Tampa, FL, November 13, 2006.

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David A. Bader, Kamesh Madduri (2006). Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2. 2006 International Conference on Parallel Processing (ICPP 2006), 14-18 August 2006, Columbus, Ohio, USA.

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David A. Bader, Guojing Cong, John Feo (2005). On the Architectural Requirements for Efficient Execution of Graph Algorithms. 34th International Conference on Parallel Processing (ICPP 2005), 14-17 June 2005, Oslo, Norway.

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David A. Bader, Vipin Sachdeva (2005). Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, CSB 2005 Workshops, Stanford, CA, USA, August 8-11, 2005.

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David A. Bader (2005). High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology. Experimental and Efficient Algorithms, 4th InternationalWorkshop, WEA 2005, Santorini Island, Greece, May 10-13, 2005, Proceedings.

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David A. Bader, Kamesh Madduri (2005). Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors (HiPC Most Impactful Papers Award). High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings.

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David A. Bader, V. Sachdeva, A. Trehan, V. Agarwal, G. Gupta, A. N. Singh (2005). BioSPLASH: A sample workload from bioinformatics and computational biology for optimizing next-generation high-performance computer systems. Poster Session. 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005), Detroit, MI, June 25-29, 2005.

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David A. Bader, Yue Li, Tao Li, Vipin Sachdeva (2005). BioPerf: a benchmark suite to evaluate high-performance computer architecture on bioinformatics applications. Proceedings of the 2005 IEEE International Symposium on Workload Characterization.

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Guojing Cong, David A. Bader (2005). An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs). 19th International Parallel and Distributed Processing Symposium (IPDPS 2005), 4-8 April 2005, Denver, CO, USA.

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Guojing Cong, David A. Bader (2005). An Empirical Analysis of Parallel Random Permutation Algorithms on SMPs. Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, September 12-14, 2005 Imperial Palace Hotel, Las Vegas, Nevada, USA.

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David A. Bader, Vipin Sachdeva (2005). A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. Proceedings of the ISCA 18th International Conference on Parallel and Distributed Computing Systems, September 12-14, 2005 Imperial Palace Hotel, Las Vegas, Nevada, USA.

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Guojing Cong, David A. Bader (2004). The Euler Tour Technique and Parallel Rooted Spanning Tree. 33rd International Conference on Parallel Processing (ICPP 2004), 15-18 August 2004, Montreal, Quebec, Canada.

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Guojing Cong, David A. Bader (2004). Lock-Free Parallel Algorithms: An Experimental Study. High Performance Computing - HiPC 2004, 11th IEEE International Conference, Bangalore, India, December 19-22, 2004, Proceedings.

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Mohammed Javeed Zaki, David A. Bader, Johan Montagnat, Concettina Guerra (2004). High Performance Bioinformatics. Euro-Par 2004 Parallel Processing, 10th International Euro-Par Conference, Pisa, Italy, August 31-September 3, 2004.

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David A. Bader, Guojing Cong (2004). Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs. 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 26-30 April 2004, Santa Fe, NM.

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David A. Bader, Kamesh Madduri (2004). A Parallel State Assignment Algorithm for Finite State Machines. High Performance Computing - HiPC 2004, 11th IEEE International Conference, Bangalore, India, December 19-22, 2004, Proceedings.

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Mehmet F. Su, Ihab El-Kady, David A. Bader, Shawn-Yu Lin (2004). A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization. 33rd International Conference on Parallel Processing (ICPP 2004), 15-18 August 2004, Montreal, Quebec, Canada.

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David A. Bader, Guojing Cong (2004). A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors (SMPs). 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 26-30 April 2004, Santa Fe, NM.

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David A. Bader, Srinivas Aluru (2002). HiCOMB 2002: Workshop Introduction. 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 15-19 April 2002, Fort Lauderdale, FL, USA, CD-ROM/Abstracts Proceedings.

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David A. Bader, Sukanya Sreshta, Nina R. Weisse-Bernstein (2002). Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs). High Performance Computing - HiPC 2002, 9th International Conference, Bangalore, India, December 18-21, 2002, Proceedings.

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Yuzhong Sun, David A. Bader, Xiaola Lin, Yibei Ling (2002). Broadcast on Clusters of SMPs with Optimal Concurrency. Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications - Volume 4.

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Robert K. Jansen, David Bader, Bernard M.E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia Wyman (2001). New approaches for using gene order data in phylogeny reconstruction. Botany 2001.

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C. Restrepo, B. T. Milne, D. Bader, W. Pockman, A. Kerkhoff (2001). Variation in vegetation growth rates: Implications for the evolution of semi-arid landscapes. 16th Annual Symposium of the US-International Association of Landscape Ecology, Arizona State University, Tempe, April 25-29, 2001.

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David A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein (2001). Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. Algorithm Engineering, 5th International Workshop, WAE 2001 Aarhus, Denmark, August 28-31, 2001, Proceedings.

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David A. Bader, Bernard M. E. Moret, Lisa Vawter (2001). Industrial applications of high-performance computing for phylogeny reconstruction. Commercial Applications for High-Performance Computing. (ITCom 2001: International Symposium on the Convergence of IT and Communications, 2001, Denver, CO, United States).

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Bernard M. E. Moret, David A. Bader, Tandy J. Warnow (2001). High-Performance Algorithm Engineering for Computational Phylogenetics. Computational Science - ICCS 2001, International Conference, San Francisco, CA, USA, May 28-30, 2001. Proceedings, Part II.

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Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy J. Warnow, Mi Yan (2001). A New Implmentation and Detailed Study of Breakpoint Analysis. Proceedings of the 6th Pacific Symposium on Biocomputing, PSB 2001, Big Island, Hawaii, January 3-7, 2001.

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David A. Bader, Bernard M. E. Moret, Mi Yan (2001). A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. Algorithms and Data Structures, 7th International Workshop, WADS 2001, Providence, RI, USA, August 8-10, 2001, Proceedings.

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Rob Pennington, David A. Bader, Barney Maccabe, Patricia A. Kovatch, Stephen L. Scott (2000). Tutorial A: Design and Analysis of High Performance Clusters. 2000 IEEE International Conference on Cluster Computing (CLUSTER 2000), November 28th - December 1st, 2000, Technische Universität Chemnitz, Saxony, Germany.

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David A. Bader (2000). High-Performance Algorithms and Applications for SMP Clusters. 5th NASA High Performance Computing and Communications Computational Aerosciences (CAS) Workshop (HPCC/CAS 2000); February 15, 2000 - February 17, 2000; Moffett Field, CA; United States.

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David A. Bader (2000). An Improved Randomized Selection Algorithm With an Experimental Study. Second Workshop on Algorithm Engineering and Experiments (ALENEX00), (sponsored by DIMACS, ACM SIGACT, and SIAM), San Francisco, CA, January 7-8, 2000.

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David A. Bader, Arthur B. Maccabe, Jason R. Mastaler, John K. McIver III, Patricia A. Kovatch (1999). Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster. 1st International Workshop on Cluster Computing (IWCC ‘99), 2-3 December 1999, Melbourne, Australia.

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S. N. V. Kalluri, Z. Zhang, J. Jaja, D. A. Bader, H. Song, N. El Saleous, E. Vermote, J. R. G. Townshend (1999). A hierarchical data archiving and processing system to generate custom tailored products from AVHRR data. IEEE 1999 International Geoscience and Remote Sensing Symposium. IGARSS'99.

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David A. Bader, Joseph JáJá (1996). Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection. Proceedings of IPPS ‘96, The 10th International Parallel Processing Symposium, April 15-19, 1996, Honolulu, Hawaii, USA.

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David R. Helman, David A. Bader, Joseph JáJá (1996). Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract). Proceedings of the 8th Annual ACM Symposium on Parallel Algorithms and Architectures, SPAA ‘96, Padua, Italy, June 24-26, 1996.

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David A. Bader, Joseph JáJá, David Harwood, Larry S. Davis (1996). Parallel Algorithms for Image Enhancement and Segmentation by Region Growing with an Experimental Study. Proceedings of IPPS ‘96, The 10th International Parallel Processing Symposium, April 15-19, 1996, Honolulu, HI.

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David A. Bader, Joseph JáJá (1995). Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. Proceedings of the Fifth ACM SIGPLAN Symposium on Principles & Practice of Parallel Programming (PPOPP), Santa Barbara, CA, July 19–21, 1995.

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